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6 views

How does hashing achieve sketching?

Given a sequence $x \in \{ 1,2,3...,\vert \Sigma \vert \}^*$ one wants to create a sketch of it say $s(x)$ of size $\frac{2c}{3}k (ln^2 k)$ bits. And that seems to be achieved as follows, pick at ...
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0answers
14 views

More about the ESP tree

In this previous question I had asked about the intuition behind looking at the ESP tree. One place where it is used is to construct an approximation of arbitrary distance functions $d : [m]^n ...
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1answer
78 views

Why can't edit distance be solved as L1 distance?

Given two strings $x$ and $y$ over the alphabet $\Sigma$ one defines the edit-distance $\text{ed}(x,y)$ as the minimum number of substitutions, insertions and deletions of characters required to ...
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1answer
34 views

Sequence alignment with one to many characters

I'm trying to align a sequence of characters together, I found that sequence alignment algorithms which use dynamic programming like Needleman-Wunsch or Smith–Waterman only align one character with ...
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1answer
60 views

Skienna's recursive algorithm for edit distance

I'm having some trouble understanding part of Skienna's algorithm for edit distance presented in his Algorithm Design Manual. I'm posting the recursive version, prior to when he applies dynamic ...
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1answer
72 views

Why is the running time of edit distance with memoization $O(mn)$?

I understand without memoization it is going to be $O(3^{\max\,\{m,n\}})$ because every call results in extra three calls: thus we end up having a call tree with three children for each node, with ...
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2answers
718 views

Edit distance (Levenshtein-Distance) algorithm explanation

I want to calculate the edit distance (aka Levenshtein-Distance) between two words: «solo» and «oslo». According to this site we'll get the result matrix: What I don't understand is: In case of ...
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2answers
143 views

How fast can we identifiy almost-duplicates in a list of strings?

I'm having trouble figuring out the upper bound running time for this scenario: Input: $N$ number of strings $M$ upper bound of string length $T$ threshold for edit distance (2 strings with a ...
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3answers
131 views

Is there a basic proof that there exists some edit distance between two strings?

Title says it all pretty much. I do realize that often edit distance is defined as the minimum number of operations needed to transform one string to another, but I want something to point to that's ...
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0answers
148 views

Distance preserving projection for Euclidean distance

Suppose I have two vectors $V_1, V_2 \in R^l$. Can they be converted into bit vectors $B_1,B_2 \in \{0,1\}^l $ such that if $V_1, V_2$ is close in Euclidean distance, $B_1,B_2$ is close in hamming ...
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1answer
189 views

Semi-local Levenshtein distance

If you have a long string of length $n$ and a shorter string of length $m$, what is a suitable recurrence to let you compute all $n-m+1$ Levevenshtein distances between the shorter string and all ...
2
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1answer
461 views

Levenstein distance and dynamic time warp

I am not sure how to draw parallel between the Wagner–Fischer algorithm and dtw algo. In both case we want to find the distance of each index combination (i,j). In Wagner–Fischer, we initiate the ...
6
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1answer
759 views

Alternative to Hamming distance for permutations

I have two strings, where one is a permutation of the other. I was wondering if there is an alternative to Hamming distance where instead of finding the minimum number of substitutions required, it ...