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What would be an ideal environment/manner to judge the effectiveness of multiple segmentation algorithms? The goal is to determine which algorithms provide the best results for pre-clinical imaging. Our group has considered a GUI in MATLAB, and have different modules for different algorithms. Various papers have conducted such algorithm analyses in clinical scenarios, but none give an indication to their environment.

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closed as primarily opinion-based by D.W., David Richerby, Luke Mathieson, Juho, Tom van der Zanden Jul 8 '15 at 16:12

Many good questions generate some degree of opinion based on expert experience, but answers to this question will tend to be almost entirely based on opinions, rather than facts, references, or specific expertise. If this question can be reworded to fit the rules in the help center, please edit the question.

  • $\begingroup$ "Ideal" is subjective / a matter of opinion, and subjective questions are typically not a good fit here. What are you trying to achieve? What approaches have you considered? What are your goals? What research have you done/ Please edit your question to flesh it out in considerably more detail. $\endgroup$ – D.W. Jul 7 '15 at 18:33
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Google "image segmentation benchmark". You will find various data sets with ground truth, such as this one.

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