Aggregate method $\def\C{\mathcal C}$
The $i$-th bit is flipped every $2^i$ steps.
Imaging the counter was increased from $0$ to $b$ and then from $b$ to $b+n$. The total cost of all $n+b$ increments is:
$$(n+b) + \frac{n+b}2 +\frac{n+b}4 + \cdots +\frac{n+b}{2^{\lfloor log_2(n+b)\rfloor}}\le 2(n+b)\le 4n$$
So, the total cost of the last $n$ increments is at most $4n$. $\quad\checkmark$
Potential method.
Assume that you have proved the amortized cost of each increment is at most 2 before. Imagine the counter is increased from $0$ to $b$ and then from $b$ to $b+n$. The total cost of all $b+n$ increments is no more than the total amortized cost of all $b+n$ increments, which is at most $2(b+n)\le 4n$. Of course, the cost of last $n$ increments is no more than the total cost of all $b+n$ increments. $\quad\checkmark$
Otherwise, let us start from scratch.
Let $\C$ be the $k$-bit binary counter. The value of $C$ is the binary number represented by $\C$, i.e.,
$$V(\C)=d_0 + 2d_1 +· · · + 2^{k−1}d_{k−1},$$
where $d_i$ is the value of $i$-th significant bit of $\C$. We may refer to $\C$ at a moment by $V(\C)$ at that moment.
The potential of $\C$ is defined as the number of $1$s in it, i.e.,
$$ \Phi(\C) = d_0 + d_1 +· · · + d_{k−1}$$
Let us compute the amortized cost for an increment operation.
Suppose the $j$-th increment reset $t_j$ bits, changing the value of $\C$ to $v_{j-1}$ to $v_{j}$. ($v_0=b$)
The actual cost of the increment, $c_j$ is therefore at most $t_j+1$, since in addition to resetting $t_j$ bits, it sets at most one bit to $1$.
- If $v_j=0$, i.e. $\Phi(v_j)=0$, then the $j$-th increment resets all $k$ bits, and so $\Phi(v_{j-1})=t_j=k$.
- If $v_j>0$, then $\Phi(v_j)=\Phi(v_{j-1})-t_j+1$.
In either case, $\Phi(v_j)\le \Phi(v_{j-1})-t_j+1$, and the potential difference is
$$\Phi(v_j)-\Phi(v_{j-1})\le \Phi(v_{j-1})-t_j+1-\Phi(v_{j-1}) = 1 - t_j$$
The amortized cost
$$\widehat{c_j}=c_j + \Phi(v_j)-\Phi(v_{j-1})\le (t_j+1)+(1-t_j)=2$$
After $n$ increments, the amortized cost
$$\sum_{j=1}^n\widehat{c_j}=\sum_{j=1}^nc_j + \Phi(v_n)-\Phi(v_0)\le2n\\
$$
So,
$$\begin{aligned}
\sum_{j=1}^nc_j &\le 2n -\Phi(v_n)+\Phi(v_0)\le2n -\Phi(v_n)+v_0\\
&=2n-\Phi(v_n)+b=2n-\Phi(v_n)+n= 3n-\Phi(v_n)\le3n\\
\end{aligned}$$
That is, the cost of $n$ increments from the initial state $b$ does not exceed $3n$.
With tighter estimation, we can see that, in fact, the cost is at most $2n + \log_2(b+1)$.